NeuroAnalyzer tutorials: Importing/exporting data

Import

The following data formats are supported:

• EDF (.edf)
• EDF+ (.edf)
• Alice4 EDF (.edf)
• BDF (.bdf)
• BDF+ (.bdf)
• GDF (.gdf)
• DigiTrack (.ascii)
• BrainVision (.vhdr)
• CSV (.csv): channels × time or time × channels data tables are recognized automatically
• EEGLAB (.set): preliminary support
• FIFF (.fif|.fiff): preliminary support
• NIRS (.nirs)
• SNIRF (.snirf)
• NIRX (.nirx)

Load recording file – proper importer is recognized based on file extension:

eeg = import_recording("eeg-test-edf.edf")

By default, channel types (EEG, ECG, EOG, etc.) are recognized automatically based on channel labels. This may not work for some recordings with weird channel names. Channel type detection can be disabled using detect_type::Bool parameter:

eeg = import_recording("eeg-test-edf.edf")
eeg.header.recording[:channel_type]
eeg = import_recording("eeg-test-edf.edf", detect_type=false)
eeg.header.recording[:channel_type]

Load EDF/EDF+:

eeg = import_recording("eeg-test-edf.edf")
eeg = import_recording("eeg-test-edfplus.edf")

Load Alice4 EDF:

eeg = import_alice4("eeg-test-alice4.edf")

Load BDF/BDF+:

eeg = import_recording("eeg-test-bdf.bdf")
eeg = import_recording("eeg-test-bdfplus.bdf")

Load GDF:

eeg = import_recording("eeg-test-gdf_1.25.gdf")
eeg = import_recording("eeg-test-gdf_2.20.gdf")

Load DigiTrack:

eeg = import_digitrack("eeg-test-digitrack.txt")

Load BrainVision (at least two files must be provided: .vhdr/.ahdr and .eeg):

eeg = import_recording("eeg-test-bv.vhdr")
eeg = import_recording("eeg-test-bv.ahdr")

(!) BrainVision .eeg and .vmrk (markers, optional) files will be loaded using file names provided in .vhdr/.ahdr. All three files must be located in the same folder.

Load CSV:

eeg = import_csv("eeg-test_chxt.csv.gz")
eeg = import_csv("eeg-test_txch.csv.gz")

Load SET:

eeg = import_set("eeg-test-eeglab.set")

Export

Object may be exported to CSV files:

export_csv(eeg, file_name="eeg.csv")

(!) By default, only signals are exported.

To export header meta-data, markers, components and locs:

export_csv(eeg, file_name="eeg.csv", header=true, components=true, markers=true, locs=true)

Save

NeuroAnalyzer NEURO objects are saved as HDF5 file.

To save the object:

save(eeg, file_name="eeg.hdf")

To overwrite, set overwrite=true:

save(eeg, file_name="eeg.hdf", overwrite=true)

(!) Filename extension must be .hdf

Load

Loading NeuroAnalyzer object from HDF5:

eeg = load("eeg.hdf")