using NeuroAnalyzer
eeg = load("files/eeg.hdf");[ Info: Loaded: EEG (24 × 282991 × 1; 1105.43 s)NeuroAnalyzer tutorials: Analyze EEG (1)
Load data:
Any analysis data (e.g. ICA, PCA) can be stored within the NeuroAnalyzer object as a component.
For more details, see add_component(), list_component(), delete_component(), rename_component(), component_type(), extract_component().
(!) Since components are derived from the signal, all embedded components are removed from the object when the signal data is altered in any way (e.g. channel removal, filtering).
(!) All embedded components are saved together with the signal data when using save() in the native NeuroAnalyzer format (HDF5).
Add component:
e = epoch_stats(eeg)
add_component!(eeg, c=:epoch_mean, v=e[1])Show components:
list_component(eeg)1-element Vector{Symbol}:
:epoch_meanGet component type:
component_type(eeg, c=:epoch_mean)Vector{Float64} (alias for Array{Float64, 1})
Get data of the embedded component:
extract_component(eeg, c=:epoch_mean)1-element Vector{Float64}:
0.025165531627866868Delete component:
delete_component(eeg, c=:epoch_mean)NeuroAnalyzer.NEURO(NeuroAnalyzer.HEADER(Dict{Symbol, Any}(:weight => -1, :id => "", :middle_name => "", :height => -1, :head_circumference => -1, :handedness => "", :last_name => "528004 SIT 52, 20220831-122227-{d589f756-53fc-4f1b-915d-6e3b8c1560ad}", :first_name => ""), Dict{Symbol, Any}(:epoch_id => "", :channel_type => ["eeg", "eeg", "eeg", "eeg", "eeg", "eeg", "eeg", "eeg", "eeg", "eeg" … "eeg", "eeg", "ref", "ref", "eeg", "eeg", "eeg", "eog", "eog", "ecg"], :label => ["Fp1", "Fp2", "F3", "F4", "C3", "C4", "P3", "P4", "O1", "O2" … "T5", "T6", "A1", "A2", "Fz", "Cz", "Pz", "EOG1", "EOG2", "ECG"], :prefiltering => ["HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz" … "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz"], :gain => [0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218 … 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218], :data_type => "eeg", :recording_notes => "", :recording_date => "31.08.22", :sampling_rate => 256, :file_type => "EDF"…), Dict(:name => "", :design => "", :notes => "")), [0.0, 0.004, 0.008, 0.012, 0.016, 0.02, 0.023, 0.027, 0.031, 0.035 … 1105.395, 1105.398, 1105.402, 1105.406, 1105.41, 1105.414, 1105.418, 1105.422, 1105.426, 1105.43], [0.0, 0.004, 0.008, 0.012, 0.016, 0.02, 0.023, 0.027, 0.031, 0.035 … 1105.395, 1105.398, 1105.402, 1105.406, 1105.41, 1105.414, 1105.418, 1105.422, 1105.426, 1105.43], [4.992164730175867 5.664430996112374 … -3.1830986460670267 0.0006574697346035663; 10.545994968978613 8.645145968055244 … 2.690060794085174 0.0004150149321296981; … ; -8.292293128262147 -5.490081181977235 … -0.6385598239986807 0.0008236881401195717; -10.297767714759269 4.464504630941899 … -8.80813398237423 0.0018241535887852933;;;], Dict{Any, Any}(), 0×5 DataFrame
Row │ id start length description channel
│ String Float64 Float64 String Int64
─────┴────────────────────────────────────────────────, 23×9 DataFrame
Row │ label loc_radius loc_theta loc_x loc_y loc_z loc_radius_sp ⋯
│ String Float64 Float64 Float64 Float64 Float64 Float64 ⋯
─────┼──────────────────────────────────────────────────────────────────────────
1 │ Fp1 1.0 108.0 -0.31 0.95 -0.03 1.0 ⋯
2 │ Fp2 1.0 72.0 0.31 0.95 -0.03 1.0
3 │ F7 1.0 144.0 -0.81 0.59 -0.03 1.0
4 │ F3 0.65 129.0 -0.55 0.67 0.5 1.0
5 │ Fz 0.51 90.0 0.0 0.72 0.7 1.0 ⋯
6 │ F4 0.65 51.0 0.55 0.67 0.5 1.0
7 │ F8 1.0 36.0 0.81 0.59 -0.03 1.0
8 │ T3 1.0 180.0 -1.0 0.0 -0.03 1.0
9 │ C3 0.51 180.0 -0.72 0.0 0.7 1.0 ⋯
10 │ Cz 0.0 0.0 0.0 0.0 1.0 1.0
11 │ C4 0.51 0.0 0.72 0.0 0.7 1.0
⋮ │ ⋮ ⋮ ⋮ ⋮ ⋮ ⋮ ⋮ ⋱
14 │ P3 0.65 231.0 -0.55 -0.67 0.5 1.0
15 │ Pz 0.51 270.0 0.0 -0.72 0.7 1.0 ⋯
16 │ P4 0.65 309.0 0.55 -0.67 0.5 1.0
17 │ T6 1.0 324.0 0.81 -0.59 -0.03 1.0
18 │ O1 1.0 252.0 -0.31 -0.95 -0.03 1.0
19 │ O2 1.0 288.0 0.31 -0.95 -0.03 1.0 ⋯
20 │ A1 1.0 192.0 -0.92 -0.23 -0.55 1.1
21 │ A2 1.0 -12.0 0.92 -0.23 -0.55 1.1
22 │ EOG1 1.01 149.0 -0.87 0.51 -0.37 1.0
23 │ EOG2 1.01 31.0 0.87 0.51 -0.37 1.0 ⋯
3 columns and 2 rows omitted, ["reset_components(OBJ)", "filter(OBJ, ch=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24], fprototype=iirnotch, ftype=nothing, cutoff=50, order=8, rp=-1, rs=-1, dir=twopass, w=nothing)", "reset_components(OBJ)", "filter(OBJ, ch=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24], fprototype=fir, ftype=hp, cutoff=0.1, order=8, rp=-1, rs=-1, dir=twopass, w=nothing)", "reset_components(OBJ)", "trim(OBJ, seg=(1, 257), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(1793, 2561), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(1537, 2049), remove_epochs=false)" … "reset_components(OBJ)", "trim(OBJ, seg=(20929, 23553), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(19137, 21313), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(17409, 19585), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(49537, 51265), remove_epochs=false)", "add_component(OBJ, c=epoch_mean, v", "delete_component(OBJ, c=epoch_mean)"])
Delete all components:
reset_components(eeg)NeuroAnalyzer.NEURO(NeuroAnalyzer.HEADER(Dict{Symbol, Any}(:weight => -1, :id => "", :middle_name => "", :height => -1, :head_circumference => -1, :handedness => "", :last_name => "528004 SIT 52, 20220831-122227-{d589f756-53fc-4f1b-915d-6e3b8c1560ad}", :first_name => ""), Dict{Symbol, Any}(:epoch_id => "", :channel_type => ["eeg", "eeg", "eeg", "eeg", "eeg", "eeg", "eeg", "eeg", "eeg", "eeg" … "eeg", "eeg", "ref", "ref", "eeg", "eeg", "eeg", "eog", "eog", "ecg"], :label => ["Fp1", "Fp2", "F3", "F4", "C3", "C4", "P3", "P4", "O1", "O2" … "T5", "T6", "A1", "A2", "Fz", "Cz", "Pz", "EOG1", "EOG2", "ECG"], :prefiltering => ["HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz" … "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz", "HP:0,18Hz LP:104,0Hz"], :gain => [0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218 … 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218, 0.17935713740749218], :data_type => "eeg", :recording_notes => "", :recording_date => "31.08.22", :sampling_rate => 256, :file_type => "EDF"…), Dict(:name => "", :design => "", :notes => "")), [0.0, 0.004, 0.008, 0.012, 0.016, 0.02, 0.023, 0.027, 0.031, 0.035 … 1105.395, 1105.398, 1105.402, 1105.406, 1105.41, 1105.414, 1105.418, 1105.422, 1105.426, 1105.43], [0.0, 0.004, 0.008, 0.012, 0.016, 0.02, 0.023, 0.027, 0.031, 0.035 … 1105.395, 1105.398, 1105.402, 1105.406, 1105.41, 1105.414, 1105.418, 1105.422, 1105.426, 1105.43], [4.992164730175867 5.664430996112374 … -3.1830986460670267 0.0006574697346035663; 10.545994968978613 8.645145968055244 … 2.690060794085174 0.0004150149321296981; … ; -8.292293128262147 -5.490081181977235 … -0.6385598239986807 0.0008236881401195717; -10.297767714759269 4.464504630941899 … -8.80813398237423 0.0018241535887852933;;;], Dict{Any, Any}(), 0×5 DataFrame
Row │ id start length description channel
│ String Float64 Float64 String Int64
─────┴────────────────────────────────────────────────, 23×9 DataFrame
Row │ label loc_radius loc_theta loc_x loc_y loc_z loc_radius_sp ⋯
│ String Float64 Float64 Float64 Float64 Float64 Float64 ⋯
─────┼──────────────────────────────────────────────────────────────────────────
1 │ Fp1 1.0 108.0 -0.31 0.95 -0.03 1.0 ⋯
2 │ Fp2 1.0 72.0 0.31 0.95 -0.03 1.0
3 │ F7 1.0 144.0 -0.81 0.59 -0.03 1.0
4 │ F3 0.65 129.0 -0.55 0.67 0.5 1.0
5 │ Fz 0.51 90.0 0.0 0.72 0.7 1.0 ⋯
6 │ F4 0.65 51.0 0.55 0.67 0.5 1.0
7 │ F8 1.0 36.0 0.81 0.59 -0.03 1.0
8 │ T3 1.0 180.0 -1.0 0.0 -0.03 1.0
9 │ C3 0.51 180.0 -0.72 0.0 0.7 1.0 ⋯
10 │ Cz 0.0 0.0 0.0 0.0 1.0 1.0
11 │ C4 0.51 0.0 0.72 0.0 0.7 1.0
⋮ │ ⋮ ⋮ ⋮ ⋮ ⋮ ⋮ ⋮ ⋱
14 │ P3 0.65 231.0 -0.55 -0.67 0.5 1.0
15 │ Pz 0.51 270.0 0.0 -0.72 0.7 1.0 ⋯
16 │ P4 0.65 309.0 0.55 -0.67 0.5 1.0
17 │ T6 1.0 324.0 0.81 -0.59 -0.03 1.0
18 │ O1 1.0 252.0 -0.31 -0.95 -0.03 1.0
19 │ O2 1.0 288.0 0.31 -0.95 -0.03 1.0 ⋯
20 │ A1 1.0 192.0 -0.92 -0.23 -0.55 1.1
21 │ A2 1.0 -12.0 0.92 -0.23 -0.55 1.1
22 │ EOG1 1.01 149.0 -0.87 0.51 -0.37 1.0
23 │ EOG2 1.01 31.0 0.87 0.51 -0.37 1.0 ⋯
3 columns and 2 rows omitted, ["reset_components(OBJ)", "filter(OBJ, ch=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24], fprototype=iirnotch, ftype=nothing, cutoff=50, order=8, rp=-1, rs=-1, dir=twopass, w=nothing)", "reset_components(OBJ)", "filter(OBJ, ch=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24], fprototype=fir, ftype=hp, cutoff=0.1, order=8, rp=-1, rs=-1, dir=twopass, w=nothing)", "reset_components(OBJ)", "trim(OBJ, seg=(1, 257), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(1793, 2561), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(1537, 2049), remove_epochs=false)" … "reset_components(OBJ)", "trim(OBJ, seg=(20929, 23553), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(19137, 21313), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(17409, 19585), remove_epochs=false)", "reset_components(OBJ)", "trim(OBJ, seg=(49537, 51265), remove_epochs=false)", "add_component(OBJ, c=epoch_mean, v", "reset_components(OBJ)"])